Need some help..

I resently installed WP..and am having a ton of problems..it’s really sad actually. Anyway, I worked out -most- of the problems except a few.
One –
I used a php include thing to include the index.php for WP to my main blog page. I left the wp page blank (http://tainted-sky.net/wp) so now my comments page is also blank. How can I get my layout part to show up for it the comments page? If thats not possible, how do I get it to use a pop up..? (like do I change some setting to make it be a pop up instead of the normal way..?) My website is http://tainted-sky.net
two –
I know with GM there was a section where you can set a paragraph break to automatically use p align=justify..I was wondering if wp has this option as well..or one similar??
Hm..I think thats it..for now..I’m sure I’ll mess something else up. Thanks