I ran into this same issue, and to pickup where your message left out (for the benefit of those who experience the same issue), with the new update, the format of the shortcodes has now apparently changed.
WAS
[etsy-include=your-etsy-shop-name;your-etsy-shop-setion-id]
IS NOW:
[etsy-shop shop_name=”your-etsy-shop-name” section_id=”your-etsy-shop-setion-id”]
Depending on how many references are on your site, this could be an annoying fix.
Frankly, the developer should have created a sticky notice, etc. so that upon updating the plugin, the user is alerted that all the shortcodes will have now to be reformatted.
Further, it seems the “Video SEO” plugin has a similar interface to what I’ve described above (see link below). Why not the same for the traditional SEO plugin?
http://kb.yoast.com/article/45-how-does-the-plugin-work-with-videos-in-custom-fields
I am having the exact same issue. Were you able to figure out a solve?