It’s the same, whatever site I am in the backend of the admin links only lead to that site. Another example, when I am in the My Sites area, where there are links to Visit and Dashboard for each of my sites, the visit links lead to the correct URL’s, but the Dashboard links, all lead to the admin area of whatever site’s backend I am in.
I went through the upgrade from MU 2.9.2 to 3.0 Multisite as directed and it went ok. I am also missing the Network link in Tools and I am having some Admin link problems. In the Super Admin -> Sites area, when I try to move between site backends, the URL’s are not updating. They stay relative to whatever site backend I happen to be in. So for example, if i’m in at site1/wp-admin and I try any of the links for site2, they still lead to site1/wp-admin. I’ve checked my .htaccess and it seems to be right. Any ideas?