Sorry thought I was posting there.
I cannot find where to edit my question but I have noticed that it works when the order sum is above 1000. I have set up minimun of 300 for SE and 1000 for others. however this should not be affecting each other. It did not do that before. Than I would see the other shipping whenever order under 5000 and then free from 5000. So still not sure what is wrong now since no chanes have been made to settings.