Unfortunately this is still occurring. Any resolution to this yet??
Finally sorted this one out ourselves but will put the solution here incase anyone else experiences this problem as well.
It ended up being a conflict with the Easy Testimonials plugin. Even though that plugin wasn’t actually being used on the same page, both loaded the Cycle2 javavascript files somehow and caused extra navigation dots to appear below each plugins slider. Disabling Cycle2 javascript on Cyclone Slider 2 fixed this issue in our case. Then only one copy of the script loaded.