.htaccess being ignored

Hi,

I had the plugin working just fine on a shared hosting. I recently migrated everything to a VPS. After setting everything up, look like the .htaccess is being ignored by cloudfare. However the plugin does write on .htaccess.

This is the code which was working before the migration

# BEGIN WP Cloudflare Super Page Cache
# The directives (lines) between "BEGIN WP Cloudflare Super Page Cache" and "END WP Cloudflare Super Page Cache" are
# dynamically generated, and should only be modified via WordPress filters.
# Any changes to the directives between these markers will be overwritten.
<IfModule mod_expires.c>
ExpiresActive on
ExpiresByType application/xml "access plus 0 seconds"
ExpiresByType text/xsl "access plus 0 seconds"
</IfModule>
<FilesMatch "\.(xml|xsl)$">
<IfModule mod_headers.c>
Header set Cache-Control "no-cache, no-store, must-revalidate, max-age=0"
</IfModule>
</FilesMatch>
<FilesMatch "robots\.txt">
<IfModule mod_headers.c>
Header set Cache-Control "no-cache, no-store, must-revalidate, max-age=0"
</IfModule>
</FilesMatch>
<FilesMatch "\.(css|js|pdf)$">
<IfModule mod_headers.c>
Header set Cache-Control "public, must-revalidate, proxy-revalidate, immutable, max-age=2592000, stale-while-revalidate=86400, stale-if-error=604800"
</IfModule>
</FilesMatch>
<FilesMatch "\.(jpg|jpeg|png|gif|ico|eot|swf|svg|webp|avif|ttf|otf|woff|woff2|ogg|mpeg|avi|mkv|webm|mp3)$">
<IfModule mod_headers.c>
Header set Cache-Control "public, must-revalidate, proxy-revalidate, immutable, max-age=31536000, stale-while-revalidate=86400, stale-if-error=604800"
</IfModule>
</FilesMatch>
<IfModule mod_rewrite.c>
RewriteCond %{REQUEST_URI} ^(.*)?/wp-content/wp-cloudflare-super-page-cache/exposedtostrangers.com/debug.log(.*)$
RewriteRule ^(.*)$ - [F]
</IfModule>
<FilesMatch "wp-cron.php">
<IfModule mod_headers.c>
Header set Cache-Control "no-cache, no-store, must-revalidate, max-age=0"
</IfModule>
</FilesMatch>
# Added to bypass mp4 files from Cloudfare's Cache.
<FilesMatch "\.(mp4)$">
<IfModule mod_headers.c>
Header set Cache-Control "no-cache, no-store, must-revalidate, max-age=0"
</IfModule>
</FilesMatch>
# Added to cache only the latest mp4 file. Update with every release.
<FilesMatch "video1\.(mp4)$">
<IfModule mod_headers.c>
Header set Cache-Control "public, must-revalidate, proxy-revalidate, immutable, max-age=31536000, stale-while-revalidate=86400, stale-if-error=604800"
</IfModule>
</FilesMatch>
# Added to cache only the latest mp4 file from GIF. Update with every release.
<FilesMatch "video2\.(mp4)$">
<IfModule mod_headers.c>
Header set Cache-Control "public, must-revalidate, proxy-revalidate, immutable, max-age=31536000, stale-while-revalidate=86400, stale-if-error=604800"
</IfModule>
</FilesMatch>
# END WP Cloudflare Super Page Cache

The plugin is caching everything, despite the rules to no cache all .mp4s except 2 videos.

I can confirm that modules mod_expires and mod_headers on apache are turned on. Nginx is being used as a reverse proxy.

Any idea what could be going on?

Thanks