Hi there,
I think I have the exact same issue here. I use a Cherryframework based template. This is how jQuery is being loaded in theme-scripts.php:
// CherryFramework Scripts
wp_deregister_script('jquery');
wp_register_script('jquery', PARENT_URL.'/js/jquery-1.7.2.min.js', false, '1.7.2');
wp_enqueue_script('jquery');
wp_register_script('migrate', PARENT_URL.'/js/jquery-migrate-1.2.1.min.js', array('jquery'), '1.2.1');
wp_enqueue_script('migrate');
wp_register_script('modernizr', PARENT_URL.'/js/modernizr.js', array('jquery'), '2.0.6');
wp_register_script('jflickrfeed', PARENT_URL.'/js/jflickrfeed.js', array('jquery'), '1.0');
wp_register_script('superfish', PARENT_URL.'/js/superfish.js', array('jquery'), '1.5.3', true);
wp_register_script('mobilemenu', PARENT_URL.'/js/jquery.mobilemenu.js', array('jquery'), '1.0', true);
wp_register_script('easing', PARENT_URL.'/js/jquery.easing.1.3.js', array('jquery'), '1.3', true);
wp_register_script('magnific-popup', PARENT_URL.'/js/jquery.magnific-popup.min.js', array('jquery'), '0.9.3', true);
wp_register_script('flexslider', PARENT_URL.'/js/jquery.flexslider.js', array('jquery'), '2.1', true);
wp_register_script('playlist', PARENT_URL.'/js/jplayer.playlist.min.js', array('jquery'), '2.3.0', true);
wp_register_script('jplayer', PARENT_URL.'/js/jquery.jplayer.min.js', array('jquery'), '2.6.0', true);
wp_register_script('tmstickup', PARENT_URL.'/js/tmstickup.js', array('jquery'), '1.0.0', true);
wp_register_script('device', PARENT_URL.'/js/device.min.js', array('jquery'), '1.0.0', true);
wp_register_script('custom', PARENT_URL.'/js/custom.js', array('jquery'), '1.0');
You can test the prob on this page:
http://www.miragenails.ca/waxing/
Any idea?