make_clickable() break the codes

Hi , I think this is a known issue but I want to know how to fix it by correct way .. There are some solutions I found in the support topics and some other plugins .. but I am not sure they are prefect …

I read this topic :
http://ww.wp.xz.cn/support/topic/plugin-syntaxhighlighter-evolved-urls-auto-linked-in-comments-before-being-highlighted?replies=4

I didn’t test the code in the last comment #
because it seems a hack !

So .. after a year is there another solution ?

http://ww.wp.xz.cn/extend/plugins/syntaxhighlighter/