wp search-replace skipped tables

When using the following wp-cli command, I’m seeing some tables are “skipped” (primarily the core tables) while others are processed without issue.

INPUT
wp search-replace 'http://mysite.com' 'http://mysite.dev' --all-tables --dry-run

OUTPUT

| ms_links     | link_notes              | 0            | SQL  |
| ms_links     | link_rss                | 0            | SQL  |
| ms_options   |                         | skipped      |
| ms_postmeta  |                         | skipped      |
| ms_posts     |                         | skipped      |

Also, I noticed that wp_options does not have option_id set to AUTO_INCREMENT and thus there are hundreds of rows with 0 as the ID.

I don’t know if these two issues are related and was wondering if anyone has seen anything like this before (and if so, what the cause/fix was).

Thanks in advance.

Ted Stresen-Reuter