Also having the same issue (using the new Universal Analytics, set in both Google Analytics settings and the settings for this plugin).
http://www.redrosedeals.co.uk/
I’ve had a look at the page source, and the only difference I can see compared to the code it says to use in the Google Analytics setup page is that it contains the domain of the site rather than just ‘auto’.
Google Analytics code: ga(‘create’, ‘UA-47726978-1’, ‘redrosedeals.co.uk’);
Code from this plugin: ga(‘create’, ‘UA-47726978-1’, ‘auto’);
