Problem solved, there was a default.php conflicting with index.php on the root directory. Renaming the default.php to something else solved the blank page problem. If anyone comes into this problem should look out for a default.php file conflicting. Thanks for the help.
Ok, I updated manually and successfully to 3.3, this leaves me with two options, an external attack or a godaddy, mess-up. Ideas?
They’re not 777 or 766, but my ftp client won’t let me change them, it just shows ‘xxx’ and this is a windows server congif on godaddy.