Looks like unchecking the relative links box worked.
I tried that and it did not help to deactivate all plugins. Only have Yoast, formidable, and responsive menu plugins on this website that is the simplest of websites we have that is included in this issue: http://www.windyhillvillage.com.
The temporary fix worked for me too on over 5 sites but it obviously strips us of the beauty and friendliness of WP links. Hope to see a fix soon.