ttamnedlog
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@jdailey You’re welcome. I just updated to 3.0.9 and everything works! Thanks again!
@jdailey You’re welcome. Thanks for the ongoing support! The staging site is still using 3.0.6 since that is working for now. My client is still in the process of adding content on the staging site so I would hate to interfere with the functionality at the moment.
I do have access to an old domain. Let me set up a copy of the site there and I will update that one to 3.0.8. I’ll share the link once I’ve done that. Give me a bit!
I too am still having the same issue. It worked in 3.06, but 3.0.7.1 and 3.0.8 both seem to be not working as expected for me.
I have both a custom theme and a custom plugin. I have swapped themes to the default 2017 theme but it made no difference. I can’t disable my custom plugin, as that is where I have added my custom taxonomies. But it worked in 3.0.6 just fine so I would have to assume it’s not my plugin anyway.
@jfacemyer seems to be describing what I’m seeing:

But after I click save they are gone:

The thing is, in 3.0.6, the “Industry Archives” and “Status Archives” weren’t even available to select, and it worked fine without them. Now it doesn’t work without them, and I can’t select/save them anyway.
I seem to be in the same boat. My staging site running 3.0.6 is still working as intended but my local dev machine that I have updated to 3.0.7.1 is having the issues described here.
I have two sidebars. A standard WordPress sidebar on the posts page showing categories, and a custom sidebar on a portfolio page showing two custom taxonomies (Industry, Status) for a custom post type (Portfolio Company). The custom sidebar is set for the Portfolio page, and that much is working. But when clicking on an industry or status and viewing the archive for that post type, the custom sidebar is no longer displayed and instead the standard WordPress categories sidebar is displayed.
In 3.0.6, the following image is how I have it set and it is working for the various taxonomies for the custom post type of portfolio companies:

But in 3.0.7.1, this setting no longer seems to be working. In fact, there are two new possible options that weren’t available in 3.0.6. Specifically, the two custom taxonomies seen here:

It looks like all I would need to do is select “Industry Archives” and “Status Archives”, however when I select them and click Save Changes, they aren’t actually saved. If I click “Sidebar Location” again after having saved changes, “Industry Archives” and “Status Archives” were not successfully added. Only “Portfolio Company Archives” still remains.